java.lang.Object

htsjdk.samtools.fastq.BasicFastqWriter

All Implemented Interfaces:: Writer<FastqRecord>, FastqWriter, Closeable, Flushable, AutoCloseable

public class BasicFastqWriter extends Object implements FastqWriter, Flushable

In general FastqWriterFactory should be used so that AsyncFastqWriter can be enabled, but there are some cases in which that behavior is explicitly not wanted.

Constructor Summary

Constructors

Constructor

Description

BasicFastqWriter(File file)

BasicFastqWriter(File file, boolean createMd5)

BasicFastqWriter(PrintStream writer)
Method Summary

Modifier and Type

Method

Description

void

close()

void

flush()

void

write(FastqRecord rec)

Writes one item.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.io.Writer
write

Constructor Details
- BasicFastqWriter
  
  public BasicFastqWriter(File file)
- BasicFastqWriter
  
  public BasicFastqWriter(File file, boolean createMd5)
- BasicFastqWriter
  
  public BasicFastqWriter(PrintStream writer)
Method Details
- write
  
  public void write(FastqRecord rec)
  
  Description copied from interface: Writer
  
  Writes one item.
  
  Specified by:
  
  write in interface FastqWriter
  
  Specified by:
  
  write in interface Writer<FastqRecord>
  
  Parameters:
  
  rec - the item to write.
- flush
  
  public void flush()
  
  Specified by:
  
  flush in interface Flushable
- close
  
  public void close()
  
  Specified by:
  
  close in interface AutoCloseable
  
  Specified by:
  
  close in interface Closeable
  
  Specified by:
  
  close in interface FastqWriter

Class BasicFastqWriter

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Methods inherited from interface htsjdk.io.Writer

Constructor Details

BasicFastqWriter

BasicFastqWriter

BasicFastqWriter

Method Details

write

flush

close