htsjdk.samtools.fastq.AsyncFastqWriter

All Implemented Interfaces:: Writer<FastqRecord>, FastqWriter, Closeable, AutoCloseable

public class AsyncFastqWriter extends AbstractAsyncWriter<FastqRecord> implements FastqWriter

Implementation of a FastqWriter that provides asynchronous output.

Field Summary

Fields inherited from class htsjdk.samtools.util.AbstractAsyncWriter
DEFAULT_QUEUE_SIZE
Constructor Summary

Constructors

Constructor

Description

AsyncFastqWriter(FastqWriter out, int queueSize)
Method Summary

Modifier and Type

Method

Description

protected String

getThreadNamePrefix()

Returns the prefix to use when naming threads.

protected void

synchronouslyClose()

protected void

synchronouslyWrite(FastqRecord item)

Methods inherited from class htsjdk.samtools.util.AbstractAsyncWriter
close, write

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.samtools.fastq.FastqWriter
close, write

Methods inherited from interface htsjdk.io.Writer
write

Constructor Details
- AsyncFastqWriter
  
  public AsyncFastqWriter(FastqWriter out, int queueSize)
Method Details
- getThreadNamePrefix
  
  protected String getThreadNamePrefix()
  
  Description copied from class: AbstractAsyncWriter
  
  Returns the prefix to use when naming threads.
  
  Specified by:
  
  getThreadNamePrefix in class AbstractAsyncWriter<FastqRecord>
- synchronouslyWrite
  
  protected void synchronouslyWrite(FastqRecord item)
  
  Specified by:
  
  synchronouslyWrite in class AbstractAsyncWriter<FastqRecord>
- synchronouslyClose
  
  protected void synchronouslyClose()
  
  Specified by:
  
  synchronouslyClose in class AbstractAsyncWriter<FastqRecord>

Class AsyncFastqWriter

Field Summary