Package htsjdk.samtools.cram.io

Class DefaultBitOutputStream

java.lang.Object
java.io.OutputStream
htsjdk.samtools.cram.io.DefaultBitOutputStream
All Implemented Interfaces:
BitOutputStream, Closeable, Flushable, AutoCloseable
public class DefaultBitOutputStream extends OutputStream implements BitOutputStream

  • Constructor Summary

    Constructors
    Constructor
    Description
    DefaultBitOutputStream(OutputStream delegate)
     

  • Method Summary

    Modifier and Type
    Method
    Description
    void
    close()
     
    void
    flush()
     
    String
    toString()
     
    void
    write(boolean bit)
    Write a single bit specified in the boolean argument.
    void
    write(boolean bit, long repeat)
    Write a single bit specified in the boolean argument repeatedly.
    void
    write(byte b)
     
    void
    write(byte[] b)
     
    void
    write(byte[] b, int off, int length)
     
    void
    write(byte bitContainer, int nofBits)
    Write specified number of bits supplied in the byte value.
    void
    write(int value)
     
    void
    write(int bitContainer, int nofBits)
    Write specified number of bits supplied in the integer value.
    void
    write(long bitContainer, int nofBits)
    Write specified number of bits supplied in the long value.

    Methods inherited from class java.io.OutputStream

    nullOutputStream

    Methods inherited from class java.lang.Object

    clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

  • Constructor Details

    • DefaultBitOutputStream

      public DefaultBitOutputStream(OutputStream delegate)

  • Method Details

    • write

      public void write(byte b)

    • write

      public void write(int value)
      Specified by:
      write in class OutputStream

    • toString

      public String toString()
      Overrides:
      toString in class Object

    • write

      public void write(long bitContainer, int nofBits)
      Description copied from interface: BitOutputStream
      Write specified number of bits supplied in the long value. The method is naturally limited to 64 bits max.
      Specified by:
      write in interface BitOutputStream
      Parameters:
      bitContainer - an integer containing the bits to be written out
      nofBits - the number of bits to written out, minimum 0, maximum 64.

    • write

      public void write(int bitContainer, int nofBits)
      Description copied from interface: BitOutputStream
      Write specified number of bits supplied in the integer value. The method is naturally limited to 32 bits max.
      Specified by:
      write in interface BitOutputStream
      Parameters:
      bitContainer - an integer containing the bits to be written out
      nofBits - the number of bits to written out, minimum 0, maximum 32.

    • write

      public void write(byte bitContainer, int nofBits)
      Description copied from interface: BitOutputStream
      Write specified number of bits supplied in the byte value. The method is naturally limited to 8 bits max.
      Specified by:
      write in interface BitOutputStream
      Parameters:
      bitContainer - an integer containing the bits to be written out
      nofBits - the number of bits to written out, minimum 0, maximum 8.

    • write

      public void write(boolean bit)
      Description copied from interface: BitOutputStream
      Write a single bit specified in the boolean argument.
      Specified by:
      write in interface BitOutputStream
      Parameters:
      bit - emit 1 if true, 0 otherwise.

    • write

      public void write(boolean bit, long repeat)
      Description copied from interface: BitOutputStream
      Write a single bit specified in the boolean argument repeatedly.
      Specified by:
      write in interface BitOutputStream
      Parameters:
      bit - emit 1 if true, 0 otherwise.
      repeat - the number of bits to emit.

    • close

      public void close()
      Specified by:
      close in interface AutoCloseable
      Specified by:
      close in interface Closeable
      Overrides:
      close in class OutputStream

    • flush

      public void flush()
      Specified by:
      flush in interface Flushable
      Overrides:
      flush in class OutputStream

    • write

      public void write(byte[] b)
      Overrides:
      write in class OutputStream

    • write

      public void write(byte[] b, int off, int length)
      Overrides:
      write in class OutputStream