Package htsjdk.samtools.cram.io

Class CramIntArray

java.lang.Object
htsjdk.samtools.cram.io.CramIntArray
public class CramIntArray extends Object
Methods to read and write CRAM array of integers data type.

  • Constructor Details

    • CramIntArray

      public CramIntArray()

  • Method Details

    • array

      public static int[] array(InputStream inputStream)
      Read CRAM int array from a InputStream.
      Parameters:
      inputStream - the inputs stream to read from
      Returns:
      array of integers from the input stream

    • arrayAsList

      public static List<Integer> arrayAsList(InputStream inputStream)
      Read CRAM int array from a InputStream as a List.
      Parameters:
      inputStream - the inputs stream to read from
      Returns:
      List of integers from the input stream

    • write

      public static int write(List<Integer> intList, OutputStream outputStream)
      Write CRAM int List to a OutputStream.
      Parameters:
      intList - the List to be written
      outputStream - the output stream to write to
      Returns:
      the number of bits written out

    • write

      public static int write(int[] array, OutputStream outputStream)
      Write CRAM int array to a OutputStream.
      Parameters:
      array - the array to be written
      outputStream - the output stream to write to
      Returns:
      the number of bits written out