Package htsjdk.samtools.cram.encoding.writer

Class DataSeriesWriter<T>

java.lang.Object
htsjdk.samtools.cram.encoding.writer.DataSeriesWriter<T>
Type Parameters:
T - data type of the series to be written.
public class DataSeriesWriter<T> extends Object

A CRAM Data Series writer for a particular Encoding, DataSeriesType and associated parameters

Note: the class does not have a writeArray method like its counterpart DataSeriesReader because array length is known when writing, therefore the same interface can be used both for single objects and arrays.

  • Constructor Details

    • DataSeriesWriter

      public DataSeriesWriter(DataSeriesType valueType, EncodingDescriptor encodingDecriptor, SliceBlocksWriteStreams sliceBlocksWriteStreams)
      Initialize a Data Series writer
      Parameters:
      valueType - type of the data to write
      encodingDecriptor - encoding-specific parameters
      sliceBlocksWriteStreams - SliceBlocksWriteStreams