Package htsjdk.samtools.cram.encoding.readfeatures

Interface ReadFeature

All Known Implementing Classes:
BaseQualityScore, Bases, Deletion, HardClip, InsertBase, Insertion, Padding, ReadBase, RefSkip, Scores, SoftClip, Substitution
public interface ReadFeature
An interface to capture data in read coordinates.

  • Method Summary

    Modifier and Type
    Method
    Description
    byte
    getOperator()
    Read features are distinguished by operator, similar to cigar operator.
    int
    getPosition()
     

  • Method Details

    • getPosition

      int getPosition()
      Returns:
      zero-based position in the read

    • getOperator

      byte getOperator()
      Read features are distinguished by operator, similar to cigar operator.
      Returns:
      type of the read feature