Package htsjdk.samtools.cram.encoding.external

Class ExternalByteArrayCodec

java.lang.Object
htsjdk.samtools.cram.encoding.external.ExternalByteArrayCodec
All Implemented Interfaces:
CRAMCodec<byte[]>
public final class ExternalByteArrayCodec extends Object
Encode Byte Arrays using an External Data Block

  • Field Details

  • Constructor Details

    • ExternalByteArrayCodec

      public ExternalByteArrayCodec(ByteArrayInputStream inputStream, ByteArrayOutputStream outputStream)
      Construct an External Codec for Byte Arrays
      Parameters:
      inputStream - the input bytestream to read from
      outputStream - the output bytestream to write to

  • Method Details

    • read

      public byte[] read(int length)
      Description copied from interface: CRAMCodec
      Read a array of specified length from the stream
      Parameters:
      length - the number of elements to read
      Returns:
      an object from the stream

    • write

      public void write(byte[] object)
      Description copied from interface: CRAMCodec
      Write an object to the stream
      Parameters:
      object - the object to write

    • read

      public byte[] read()
      Description copied from interface: CRAMCodec
      Read a single object from the stream
      Returns:
      an object from the stream