Package htsjdk.samtools.cram.encoding

Class EncodingFactory

java.lang.Object
htsjdk.samtools.cram.encoding.EncodingFactory
public class EncodingFactory extends Object
A helper class to choose and instantiate an appropriate CRAMEncoding given a DataSeriesType and an EncodingDescriptor.

  • Constructor Details

    • EncodingFactory

      public EncodingFactory()

  • Method Details

    • createCRAMEncoding

      public static <T> CRAMEncoding<T> createCRAMEncoding(DataSeriesType valueType, EncodingDescriptor encodingDescriptor)
      Use the data series value type and EncodingDescriptor to instantiate a corresponding CRAMEncoding of the correct (generic) type.
      Type Parameters:
      T -
      Parameters:
      valueType -
      encodingDescriptor -
      Returns:

    • createCRAMEncoding

      public static <T> CRAMEncoding<T> createCRAMEncoding(DataSeriesType valueType, EncodingID encodingID, byte[] params)
      Create an encoding of the correct type for the data series type and encoding id and params.
      Type Parameters:
      T - encoding object type, like Integer or String.
      Parameters:
      valueType - data type of the values to be produced/consumed by the encoding
      encodingID - encoding id used for data serialization
      params - encoding initialization values
      Returns:
      a new encoding with the requested parameters