Package htsjdk.samtools.cram.encoding

Interface CRAMCodec<T>

Type Parameters:
T - data series type to be read or written
All Known Implementing Classes:
BetaIntegerCodec, CoreCodec, ExternalByteArrayCodec
public interface CRAMCodec<T>
An interface that defines requirements for serializing/deserializing objects into and from a stream.

  • Method Summary

    Modifier and Type
    Method
    Description
    T
    read()
    Read a single object from the stream
    T
    read(int length)
    Read a array of specified length from the stream
    void
    write(T value)
    Write an object to the stream

  • Method Details

    • read

      T read()
      Read a single object from the stream
      Returns:
      an object from the stream

    • read

      T read(int length)
      Read a array of specified length from the stream
      Parameters:
      length - the number of elements to read
      Returns:
      an object from the stream

    • write

      void write(T value)
      Write an object to the stream
      Parameters:
      value - the object to write