HtsDefaultRegistry (htsjdk 3.0.4 API)

java.lang.Object

htsjdk.beta.plugin.registry.HtsDefaultRegistry

public class HtsDefaultRegistry extends Object

A global, static, immutable, public registry for HtsCodec instances. The HtsDefaultRegistry is populated using dynamic discovery of HtsCodec implementations by a ServiceLoader. To create a private, mutable registry for resolving inputs against custom codec implementations, use HtsCodecRegistry.createPrivateRegistry().

Constructor Summary

Constructors

Constructor

Description

HtsDefaultRegistry()
Method Summary

Modifier and Type

Method

Description

static HaploidReferenceResolver

getHaploidReferenceResolver()

Grt the HaploidReferenceResolver resolver for this registry.

static ReadsResolver

getReadsResolver()

Gt the ReadsResolver resolver for this registry.

static VariantsResolver

getVariantsResolver()

Get the VariantsResolver resolver for this registry.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Details
- HtsDefaultRegistry
  
  public HtsDefaultRegistry()
Method Details
- getHaploidReferenceResolver
  
  public static HaploidReferenceResolver getHaploidReferenceResolver()
  
  Grt the HaploidReferenceResolver resolver for this registry.
  
  Returns:
  
  the HaploidReferenceResolver resolver for this registry
- getReadsResolver
  
  public static ReadsResolver getReadsResolver()
  
  Gt the ReadsResolver resolver for this registry.
  
  Returns:
  
  the ReadsResolver resolver for this registry
- getVariantsResolver
  
  public static VariantsResolver getVariantsResolver()
  
  Get the VariantsResolver resolver for this registry.
  
  Returns:
  
  the VariantsResolver resolver for this registry