htsjdk.beta.io.bundle (htsjdk 3.0.4 API)

package htsjdk.beta.io.bundle

Related Packages

Package

Description

htsjdk.beta.io
Class

Description

Bundle

An immutable collection of related resources (a primary resource, such as "reads", "variants", "features", or "reference"), plus zero or more related companion resources ("index", "dictionary", "MD5", etc.).

BundleBuilder

A builder class for Bundles.

BundleJSON

Methods for serializing and deserializing Bundles to and from JSON strings.

BundleResource

Interface defined for bundle resource objects that may be included in a Bundle.

BundleResourceBase

Base class for BundleResource implementations.

BundleResourceType

Namespace for standard constants to specify content type and format for resources contained in a Bundle.

InputStreamResource

A BundleResource backed by an InputStream.

IOPathResource

A BundleResource backed by an IOPath.

OutputStreamResource

A BundleResource backed by an OutputStream.

SeekableStreamResource

A BundleResource backed by a SeekableStream.

SignatureStream

An input stream over the first signaturePrefixLength bytes of another input stream, used to allow multiple codecs to probe those bytes for a file format/version signature.