VCFDecoderV4_3 (htsjdk 3.0.4 API)

java.lang.Object

htsjdk.beta.codecs.variants.vcf.VCFDecoder

htsjdk.beta.codecs.variants.vcf.vcfv4_3.VCFDecoderV4_3

All Implemented Interfaces:: HtsDecoder<VCFHeader,VariantContext>, HtsQuery<VariantContext>, VariantsDecoder, Closeable, AutoCloseable, Iterable<VariantContext>

public class VCFDecoderV4_3 extends VCFDecoder

VCF V4.3 decoder.

Constructor Summary

Constructors

Constructor

Description

VCFDecoderV4_3(Bundle inputBundle, VariantsDecoderOptions variantsDecoderOptions)

Create a new VCF V4.3 decoder.
Method Summary

Modifier and Type

Method

Description

HtsVersion

getVersion()

Get the version of the file format supported by this decoder.

Methods inherited from class htsjdk.beta.codecs.variants.vcf.VCFDecoder
close, getDisplayName, getFileFormat, getHeader, getInputBundle, getReadsDecoderOptions, hasIndex, isQueryable, iterator, query, query, queryStart

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface htsjdk.beta.plugin.interval.HtsQuery
query, query, queryContained, queryContained, queryContained, queryOverlapping, queryOverlapping, queryOverlapping

Methods inherited from interface java.lang.Iterable
forEach, spliterator

Constructor Details
- VCFDecoderV4_3
  
  public VCFDecoderV4_3(Bundle inputBundle, VariantsDecoderOptions variantsDecoderOptions)
  
  Create a new VCF V4.3 decoder.
  
  Parameters:
  
  inputBundle - the input Bundle to decode
  
  variantsDecoderOptions - the VariantsDecoderOptions for this decoder
Method Details
- getVersion
  
  public HtsVersion getVersion()
  
  Description copied from interface: HtsDecoder
  
  Get the version of the file format supported by this decoder.